🛠️ How to Automate Order Fulfillment on Shopify in 2025

Streamline your eCommerce operations with Amazon MCF, Shopify Fulfillment Network, and Order Automator

If you’re running a Shopify store and want to save time, reduce manual errors, and scale efficiently, automating your order fulfillment process is a game-changer.

In this guide, you’ll learn how to automate Shopify fulfillment using:

  • Amazon Multi-Channel Fulfillment (MCF)
  • Shopify Fulfillment Network (SFN)
  • Order Automator app

🔄 What Is Automated Fulfillment?

Automated fulfillment means that once a customer places an order, the backend logistics—picking, packing, shipping, and tracking—are handled by a fulfillment provider without any manual input from you.

Benefits include:

  • Faster processing times
  • Fewer errors
  • Scalable operations
  • Less time spent managing logistics

📦 Option 1: Automate Fulfillment with Amazon Multi-Channel Fulfillment (MCF)

Amazon’s MCF service allows you to store inventory at Amazon warehouses and fulfill orders from any sales channel—including Shopify.

🔧 How to Set It Up

  1. Create an Amazon Seller Central account with FBA enabled.
  2. Install Order Automator in your Shopify store.
  3. Connect your Amazon account in the app settings.
  4. Map your Shopify SKUs to Amazon SKUs.
  5. Enable auto fulfillment, auto-tagging, and shipment tracking features in Order Automator.

Once set up, new Shopify orders that match your rules will be automatically sent to Amazon FBA for fulfillment.

đźšš Shipping Methods

Amazon MCF offers:

  • Standard (3–5 business days)
  • Expedited (2 business days)
  • Priority (next day)

Map these in your Shopify shipping settings so that customer selections align with Amazon’s fulfillment speeds.

🌍 What About International Orders?

As of 2025, Amazon MCF has expanded international shipping support and now offers:

  • Unbranded packaging
  • Fulfillment of most product types beyond media
  • Competitive global shipping rates

Still, be cautious—Amazon’s global reach varies by region and product, so double-check availability for each SKU.

📦 Option 2: Automate Fulfillment with Shopify Fulfillment Network (SFN)

Shopify’s in-house fulfillment network has grown substantially and is a great choice for U.S.-based merchants.

đź’ˇ Why Choose SFN?

  • Native integration with your Shopify store
  • Fast 2-day delivery across most of the U.S.
  • Transparent pricing and real-time inventory tracking

🔧 How to Set It Up

  1. Request access or apply to SFN via your Shopify dashboard.
  2. Send inventory to Shopify’s fulfillment centers.
  3. Configure automated fulfillment rules in Settings > Shipping and Delivery.
  4. Set order routing logic if you’re using a mix of providers.

Once active, Shopify will automatically assign fulfillment to the most efficient warehouse, and tracking is sent directly to your customers.

🤖 Supercharge It with Order Automator

Whether you’re using MCF, SFN, or a hybrid setup, Order Automator helps automate everything behind the scenes.

🛠️ Key Features (Updated for 2025)

  • Auto-send orders to Amazon FBA (MCF)
  • Tag orders by product, country, shipping method
  • Block fraudulent orders by location or pattern
  • Auto-fulfill high-risk orders after review
  • Custom rule logic for power users

âś… Bonus: Order Automator now supports batch processing, custom webhook triggers, and more granular SKU mapping.

🔍 Comparison Table: MCF vs SFN

Feature Amazon MCF Shopify Fulfillment Network (SFN)
Fulfillment Speed 1–5 business days 2-day U.S. shipping standard
International Shipping Supported (2025 update) Limited to U.S.
Packaging Options Unbranded or Amazon-branded Shopify-branded
Inventory Sync Manual or via app Native integration
Shopify Native Integration No (requires app) Yes
Pricing Transparency Varies by item & region Flat-rate, easy to estimate

🧠 Final Tips for Shopify Merchants

  • Test before scaling: Run a few orders through your automated setup to ensure mapping and delivery expectations are met.
  • Keep inventory synced: Use inventory management tools or Order Automator to avoid overselling.
  • Consider a hybrid approach: Use Amazon for international and SFN for domestic to get the best of both worlds.

âś… Conclusion

Automating your Shopify order fulfillment is one of the best ways to grow your business while reducing operational headaches.

If you’re already using FBA or SFN, pair it with a smart automation tool like Order Automator to unlock maximum efficiency and control.

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